fluidsim merge requestshttps://foss.heptapod.net/fluiddyn/fluidsim/-/merge_requests2020-02-12T22:50:19Zhttps://foss.heptapod.net/fluiddyn/fluidsim/-/merge_requests/117Default2020-02-12T22:50:19ZBitbucket ImporterDefault*Created originally on Bitbucket by [Jason Reneuve](https://bitbucket.org/%7B729768e9-4f6b-40bf-802c-062cfecca79b%7D/)*
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* debug seb
* Fix plot flux...*Created originally on Bitbucket by [Jason Reneuve](https://bitbucket.org/%7B729768e9-4f6b-40bf-802c-062cfecca79b%7D/)*
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* debug seb
* Fix plot fluxes \+ example turb strat
* plot fluxes for ns3d
https://foss.heptapod.net/fluiddyn/fluidsim/-/merge_requests/116phys_fields.py fix MPI2020-01-08T16:09:20ZBitbucket Importerphys_fields.py fix MPI*Created originally on Bitbucket by [paugier (Pierre Augier)](https://bitbucket.org/%7Beb327c54-cadd-4fce-9edd-f8fe047a9b93%7D/)*
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* Fix MPI bug in p...*Created originally on Bitbucket by [paugier (Pierre Augier)](https://bitbucket.org/%7Beb327c54-cadd-4fce-9edd-f8fe047a9b93%7D/)*
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* Fix MPI bug in phys\_fields.py
* Replace formats by f-strings
https://foss.heptapod.net/fluiddyn/fluidsim/-/merge_requests/115Idempotent simulation2019-12-20T19:52:05ZBitbucket ImporterIdempotent simulation*Created originally on Bitbucket by [paugier (Pierre Augier)](https://bitbucket.org/%7Beb327c54-cadd-4fce-9edd-f8fe047a9b93%7D/)*
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* First attempt id...*Created originally on Bitbucket by [paugier (Pierre Augier)](https://bitbucket.org/%7Beb327c54-cadd-4fce-9edd-f8fe047a9b93%7D/)*
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* First attempt idempotent script for ns3d.strat
* Better idempotent script
* Improve submit script idempotent
https://foss.heptapod.net/fluiddyn/fluidsim/-/merge_requests/114Output ns3d: spectra(kz, kh) and spectral energy budget2019-12-19T14:24:53ZBitbucket ImporterOutput ns3d: spectra(kz, kh) and spectral energy budget*Created originally on Bitbucket by [paugier (Pierre Augier)](https://bitbucket.org/%7Beb327c54-cadd-4fce-9edd-f8fe047a9b93%7D/)*
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* Spectra kzkh
* ...*Created originally on Bitbucket by [paugier (Pierre Augier)](https://bitbucket.org/%7Beb327c54-cadd-4fce-9edd-f8fe047a9b93%7D/)*
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* Spectra kzkh
* Fix issue with MPI and kzkh\_periodicity
* Documentation ns3d and ns3d.strat
* plot E\(kz,kh\)
* dict\_arrays\_1time -> arrays\_1st\_time
* Compute spectral energy budget for ns3d and ns3d.strat solvers
https://foss.heptapod.net/fluiddyn/fluidsim/-/merge_requests/113New forcing type for ns3d solver (watu_coriolis)2020-02-12T22:50:15ZBitbucket ImporterNew forcing type for ns3d solver (watu_coriolis)*Created originally on Bitbucket by [paugier (Pierre Augier)](https://bitbucket.org/%7Beb327c54-cadd-4fce-9edd-f8fe047a9b93%7D/)*
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* frequency modula...*Created originally on Bitbucket by [paugier (Pierre Augier)](https://bitbucket.org/%7Beb327c54-cadd-4fce-9edd-f8fe047a9b93%7D/)*
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* frequency modulation in a class
* New forcing type for ns3d solver \(watu\_coriolis\)
* restart forcing watu\_coriolis
* Test and doc ns3d/forcing
* nb\_wave\_makers == 1
To be tested by @{5db304f02fba7b0db2f395e3} before merging!https://foss.heptapod.net/fluiddyn/fluidsim/-/merge_requests/1122dcc7d8937a12019-12-06T22:40:07ZBitbucket Importer2dcc7d8937a1*Created originally on Bitbucket by [Jason Reneuve](https://bitbucket.org/%7B729768e9-4f6b-40bf-802c-062cfecca79b%7D/)*
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* shear modes in ns3d.strat
...*Created originally on Bitbucket by [Jason Reneuve](https://bitbucket.org/%7B729768e9-4f6b-40bf-802c-062cfecca79b%7D/)*
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* shear modes in ns3d.strat
* tests for shear modes
https://foss.heptapod.net/fluiddyn/fluidsim/-/merge_requests/111Fix a bug with groupby-quantile with Pandas 0.252019-11-29T21:40:22ZBitbucket ImporterFix a bug with groupby-quantile with Pandas 0.25*Created originally on Bitbucket by [paugier (Pierre Augier)](https://bitbucket.org/%7Beb327c54-cadd-4fce-9edd-f8fe047a9b93%7D/)*
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See [https://githu...*Created originally on Bitbucket by [paugier (Pierre Augier)](https://bitbucket.org/%7Beb327c54-cadd-4fce-9edd-f8fe047a9b93%7D/)*
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See [https://github.com/pandas-dev/pandas/issues/27892](https://github.com/pandas-dev/pandas/issues/27892)https://foss.heptapod.net/fluiddyn/fluidsim/-/merge_requests/110Default2020-02-12T22:50:13ZBitbucket ImporterDefault*Created originally on Bitbucket by [Jason Reneuve](https://bitbucket.org/%7B729768e9-4f6b-40bf-802c-062cfecca79b%7D/)*
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* divh in ns3d.strat
* fixe...*Created originally on Bitbucket by [Jason Reneuve](https://bitbucket.org/%7B729768e9-4f6b-40bf-802c-062cfecca79b%7D/)*
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* divh in ns3d.strat
* fixed a bug in operators3d.urudfft\_from\_vxvyfft
* changed forcing in doc/examples/internal\_waves\_coriolis
https://foss.heptapod.net/fluiddyn/fluidsim/-/merge_requests/109Maintenance h5py2020-02-13T10:09:54ZBitbucket ImporterMaintenance h5py*Created originally on Bitbucket by [paugier (Pierre Augier)](https://bitbucket.org/%7Beb327c54-cadd-4fce-9edd-f8fe047a9b93%7D/)*
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* Remove import bu...*Created originally on Bitbucket by [paugier (Pierre Augier)](https://bitbucket.org/%7Beb327c54-cadd-4fce-9edd-f8fe047a9b93%7D/)*
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* Remove import builtins \(old py2 compat\)
* H5pyDeprecationWarning & f -> file
https://foss.heptapod.net/fluiddyn/fluidsim/-/merge_requests/108Try Fluidsim + Dedalus2019-11-21T21:16:57ZBitbucket ImporterTry Fluidsim + Dedalus*Created originally on Bitbucket by [paugier (Pierre Augier)](https://bitbucket.org/%7Beb327c54-cadd-4fce-9edd-f8fe047a9b93%7D/)*
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* Small cleanup be...*Created originally on Bitbucket by [paugier (Pierre Augier)](https://bitbucket.org/%7Beb327c54-cadd-4fce-9edd-f8fe047a9b93%7D/)*
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* Small cleanup before Dedalus
* First simulation with fluidsim.base.dedalus
* Reload Dedalus simul with load\_sim\_for\_plot
* Restart for Dedalus simulation
* Add examples of Dedalus simulations
* Buggy load\_fields.py
https://foss.heptapod.net/fluiddyn/fluidsim/-/merge_requests/107Fix issues opened by Jason2019-11-20T14:11:48ZBitbucket ImporterFix issues opened by Jason*Created originally on Bitbucket by [paugier (Pierre Augier)](https://bitbucket.org/%7Beb327c54-cadd-4fce-9edd-f8fe047a9b93%7D/)*
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* get\_field\_to\_...*Created originally on Bitbucket by [paugier (Pierre Augier)](https://bitbucket.org/%7Beb327c54-cadd-4fce-9edd-f8fe047a9b93%7D/)*
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* get\_field\_to\_plot returns \(field, time\)
* black
* init\_with\_initialized\_state called in load\_state\_phys\_file
* Improve error messages in phys\_fields3d plot
https://foss.heptapod.net/fluiddyn/fluidsim/-/merge_requests/1060.3.22019-11-14T14:02:12ZBitbucket Importer0.3.2*Created originally on Bitbucket by [paugier (Pierre Augier)](https://bitbucket.org/%7Beb327c54-cadd-4fce-9edd-f8fe047a9b93%7D/)*
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https://foss.heptapod.net/fluiddyn/fluidsim/-/merge_requests/105Default2020-02-12T22:50:08ZBitbucket ImporterDefault*Created originally on Bitbucket by [Jason Reneuve](https://bitbucket.org/%7B729768e9-4f6b-40bf-802c-062cfecca79b%7D/)*
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* fixed bugs in examples/int...*Created originally on Bitbucket by [Jason Reneuve](https://bitbucket.org/%7B729768e9-4f6b-40bf-802c-062cfecca79b%7D/)*
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* fixed bugs in examples/internal\_waves\_coriolis/simul\_ns3dstrat\_waves.py
* fixed a bug in operators.operators3d.OperatorsPseudoSpectral3D.urudfft\_from\_vxvyfft
* black
* changed confusing variable name in operators.operators3d.OperatorsPseudoSpectral3D.urudfft\_from\_vxvyfft
https://foss.heptapod.net/fluiddyn/fluidsim/-/merge_requests/104Fix a bug in examples/internal_waves_coriolis/simul_ns3dstrat_waves.py2020-02-12T22:50:07ZBitbucket ImporterFix a bug in examples/internal_waves_coriolis/simul_ns3dstrat_waves.py*Created originally on Bitbucket by [Jason Reneuve](https://bitbucket.org/%7B729768e9-4f6b-40bf-802c-062cfecca79b%7D/)*
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*Created originally on Bitbucket by [Jason Reneuve](https://bitbucket.org/%7B729768e9-4f6b-40bf-802c-062cfecca79b%7D/)*
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https://foss.heptapod.net/fluiddyn/fluidsim/-/merge_requests/103New max_elapsed parameter2019-07-15T12:20:50ZBitbucket ImporterNew max_elapsed parameter*Created originally on Bitbucket by [paugier (Pierre Augier)](https://bitbucket.org/%7Beb327c54-cadd-4fce-9edd-f8fe047a9b93%7D/)*
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* Start to impleme...*Created originally on Bitbucket by [paugier (Pierre Augier)](https://bitbucket.org/%7Beb327c54-cadd-4fce-9edd-f8fe047a9b93%7D/)*
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* Start to implement a max\_elapsed parameter
* Tests and example for params.time\_stepping.max\_elapsedhttps://foss.heptapod.net/fluiddyn/fluidsim/-/merge_requests/102Improvements function plots in modules spectra and spectral energy budget2019-06-13T12:02:08ZBitbucket ImporterImprovements function plots in modules spectra and spectral energy budget*Created originally on Bitbucket by [calpe (Miguel Calpe)](https://bitbucket.org/%7B3a110e54-047d-4a20-bfc6-0f16d9ecf7a6%7D/)*
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* Improvement method ...*Created originally on Bitbucket by [calpe (Miguel Calpe)](https://bitbucket.org/%7B3a110e54-047d-4a20-bfc6-0f16d9ecf7a6%7D/)*
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* Improvement method \_get\_concatenate\_data in spatio\_temporal\_spectra.py.
* Translation scaling k\*\*-3 with argument level3.
* Correction title Spectral energy budget.
* Remove total spectra \+ add Ozmidov.https://foss.heptapod.net/fluiddyn/fluidsim/-/merge_requests/101Warning for pkgload2019-04-30T13:37:09ZBitbucket ImporterWarning for pkgload*Created originally on Bitbucket by [avmo (Ashwin Vishnu)](https://bitbucket.org/%7Bbd72905e-cf99-4847-84c2-998104370f6e%7D/)*
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This request was auto...*Created originally on Bitbucket by [avmo (Ashwin Vishnu)](https://bitbucket.org/%7Bbd72905e-cf99-4847-84c2-998104370f6e%7D/)*
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This request was automatically generatedhttps://foss.heptapod.net/fluiddyn/fluidsim/-/merge_requests/100Hyperlinks in rst2019-04-30T13:37:28ZBitbucket ImporterHyperlinks in rst*Created originally on Bitbucket by [avmo (Ashwin Vishnu)](https://bitbucket.org/%7Bbd72905e-cf99-4847-84c2-998104370f6e%7D/)*
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This request was auto...*Created originally on Bitbucket by [avmo (Ashwin Vishnu)](https://bitbucket.org/%7Bbd72905e-cf99-4847-84c2-998104370f6e%7D/)*
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This request was automatically generatedhttps://foss.heptapod.net/fluiddyn/fluidsim/-/merge_requests/99Bibtex and __citation__2019-04-30T08:16:52ZBitbucket ImporterBibtex and __citation__*Created originally on Bitbucket by [avmo (Ashwin Vishnu)](https://bitbucket.org/%7Bbd72905e-cf99-4847-84c2-998104370f6e%7D/)*
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This request was auto...*Created originally on Bitbucket by [avmo (Ashwin Vishnu)](https://bitbucket.org/%7Bbd72905e-cf99-4847-84c2-998104370f6e%7D/)*
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This request was automatically generatedhttps://foss.heptapod.net/fluiddyn/fluidsim/-/merge_requests/98Avoid bug restart frequency_spectra.py2019-04-05T18:12:50ZBitbucket ImporterAvoid bug restart frequency_spectra.py*Created originally on Bitbucket by [calpe (Miguel Calpe)](https://bitbucket.org/%7B3a110e54-047d-4a20-bfc6-0f16d9ecf7a6%7D/)*
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* Plot instantaneous ...*Created originally on Bitbucket by [calpe (Miguel Calpe)](https://bitbucket.org/%7B3a110e54-047d-4a20-bfc6-0f16d9ecf7a6%7D/)*
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* Plot instantaneous kxkz spectra function plot.
* Avoid bugs restart frequency\_spectra.py \+ function \_concatenate\_data.
* Black.