fluidsim merge requestshttps://foss.heptapod.net/fluiddyn/fluidsim/-/merge_requests2022-10-11T22:37:03Zhttps://foss.heptapod.net/fluiddyn/fluidsim/-/merge_requests/316Interactive animations without Jupyter2022-10-11T22:37:03ZPierre AugierInteractive animations without JupyterPierre AugierPierre Augierhttps://foss.heptapod.net/fluiddyn/fluidsim/-/merge_requests/76Investigate memory leak2020-02-12T22:49:37ZBitbucket ImporterInvestigate memory leak*Created originally on Bitbucket by [avmo (Ashwin Vishnu)](https://bitbucket.org/%7Bbd72905e-cf99-4847-84c2-998104370f6e%7D/)*
*Was already merged in Bitbucket before import, marked as merged by the import user*
Related to issue #27*Created originally on Bitbucket by [avmo (Ashwin Vishnu)](https://bitbucket.org/%7Bbd72905e-cf99-4847-84c2-998104370f6e%7D/)*
*Was already merged in Bitbucket before import, marked as merged by the import user*
Related to issue #27https://foss.heptapod.net/fluiddyn/fluidsim/-/merge_requests/5Investigating issue #10 - WIP2018-06-30T06:26:47ZBitbucket ImporterInvestigating issue #10 - WIP*Created originally on Bitbucket by [avmo (Ashwin Vishnu)](https://bitbucket.org/%7Bbd72905e-cf99-4847-84c2-998104370f6e%7D/)*
*Was already merged in Bitbucket before import, marked as merged by the import user*
*Created originally on Bitbucket by [avmo (Ashwin Vishnu)](https://bitbucket.org/%7Bbd72905e-cf99-4847-84c2-998104370f6e%7D/)*
*Was already merged in Bitbucket before import, marked as merged by the import user*
https://foss.heptapod.net/fluiddyn/fluidsim/-/merge_requests/79JIT critical sw1l method divfft_from_apamfft2020-02-12T22:49:40ZBitbucket ImporterJIT critical sw1l method divfft_from_apamfft*Created originally on Bitbucket by [avmo (Ashwin Vishnu)](https://bitbucket.org/%7Bbd72905e-cf99-4847-84c2-998104370f6e%7D/)*
*Changesets for this Pull Request have not been imported, because it had been already declined on Bitbucket...*Created originally on Bitbucket by [avmo (Ashwin Vishnu)](https://bitbucket.org/%7Bbd72905e-cf99-4847-84c2-998104370f6e%7D/)*
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This request was automatically generatedhttps://foss.heptapod.net/fluiddyn/fluidsim/-/merge_requests/307Kolmogorov flow forcing2022-07-19T11:57:52ZPierre AugierKolmogorov flow forcingPierre AugierPierre Augierhttps://foss.heptapod.net/fluiddyn/fluidsim/-/merge_requests/224Let's try Github actions2022-03-05T19:35:31ZPierre AugierLet's try Github actionsPierre AugierPierre Augierhttps://foss.heptapod.net/fluiddyn/fluidsim/-/merge_requests/228Linear scale temporal spectra2021-06-09T07:09:43ZPierre AugierLinear scale temporal spectraPierre AugierPierre Augierhttps://foss.heptapod.net/fluiddyn/fluidsim/-/merge_requests/171load simul functions: set params.oper.type_fft = "default"2020-10-05T15:50:43ZPierre Augierload simul functions: set params.oper.type_fft = "default"Fix #62Fix #62Pierre AugierPierre Augierhttps://foss.heptapod.net/fluiddyn/fluidsim/-/merge_requests/24Load spatial means as an xarray dataset2020-02-12T22:48:51ZBitbucket ImporterLoad spatial means as an xarray dataset*Created originally on Bitbucket by [avmo (Ashwin Vishnu)](https://bitbucket.org/%7Bbd72905e-cf99-4847-84c2-998104370f6e%7D/)*
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* new method `load_da...*Created originally on Bitbucket by [avmo (Ashwin Vishnu)](https://bitbucket.org/%7Bbd72905e-cf99-4847-84c2-998104370f6e%7D/)*
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* new method `load_dataset`
* debug `time_first_saved` and `time_last_saved `. See [https://stackoverflow.com/questions/48063908/unexpected-error-when-using-seek-function-in-a-file-python-3-6-3?noredirect=1](https://stackoverflow.com/questions/48063908/unexpected-error-when-using-seek-function-in-a-file-python-3-6-3?noredirect=1)
* sw1l solvers will use SpatialMeansJSON as base class with some deprecated backward compatibility, the json files are lighter in size and easier to read and extend.
I propose we use SpatialMeansJSON for other solvers too - but it will be a little bit of work.https://foss.heptapod.net/fluiddyn/fluidsim/-/merge_requests/14Local version using setuptools_scm2020-02-12T22:48:43ZBitbucket ImporterLocal version using setuptools_scm*Created originally on Bitbucket by [avmo (Ashwin Vishnu)](https://bitbucket.org/%7Bbd72905e-cf99-4847-84c2-998104370f6e%7D/)*
*Changesets for this Pull Request have not been imported, because it had been already declined on Bitbucket...*Created originally on Bitbucket by [avmo (Ashwin Vishnu)](https://bitbucket.org/%7Bbd72905e-cf99-4847-84c2-998104370f6e%7D/)*
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The only caveat is the simulation initialization would pause briefly to get the mercurial version. Of course this feature is optional, and useful when in development, to store what the exact changeset was used in a run.https://foss.heptapod.net/fluiddyn/fluidsim/-/merge_requests/109Maintenance h5py2020-02-13T10:09:54ZBitbucket ImporterMaintenance h5py*Created originally on Bitbucket by [paugier (Pierre Augier)](https://bitbucket.org/%7Beb327c54-cadd-4fce-9edd-f8fe047a9b93%7D/)*
*Was already merged in Bitbucket before import, marked as merged by the import user*
* Remove import bu...*Created originally on Bitbucket by [paugier (Pierre Augier)](https://bitbucket.org/%7Beb327c54-cadd-4fce-9edd-f8fe047a9b93%7D/)*
*Was already merged in Bitbucket before import, marked as merged by the import user*
* Remove import builtins \(old py2 compat\)
* H5pyDeprecationWarning & f -> file
https://foss.heptapod.net/fluiddyn/fluidsim/-/merge_requests/25Make black, version 18.9b02018-11-06T18:56:50ZBitbucket ImporterMake black, version 18.9b0*Created originally on Bitbucket by [avmo (Ashwin Vishnu)](https://bitbucket.org/%7Bbd72905e-cf99-4847-84c2-998104370f6e%7D/)*
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This request was auto...*Created originally on Bitbucket by [avmo (Ashwin Vishnu)](https://bitbucket.org/%7Bbd72905e-cf99-4847-84c2-998104370f6e%7D/)*
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This request was automatically generatedhttps://foss.heptapod.net/fluiddyn/fluidsim/-/merge_requests/164Make fluidfft and pyfftw truly optional2020-09-21T09:37:18ZAshwin V. MohananMake fluidfft and pyfftw truly optionalRelated to #34.Related to #34.https://foss.heptapod.net/fluiddyn/fluidsim/-/merge_requests/302make get_mean_values suport t_last and t_start for tmax and tmin + black2022-06-03T20:14:27Zvlabarremake get_mean_values suport t_last and t_start for tmax and tmin + blackModify `fluidsim.base.output.base.get_mean_values` such that we can pass the following argument:
```
tmin="t_start+?"
tmin="t_last-?"
tmax="t_start+?"
tmax="t_last-?"
```
This is useful when we want to compute the mean values over the la...Modify `fluidsim.base.output.base.get_mean_values` such that we can pass the following argument:
```
tmin="t_start+?"
tmin="t_last-?"
tmax="t_start+?"
tmax="t_last-?"
```
This is useful when we want to compute the mean values over the last (or the first) times only for example.vlabarrevlabarrehttps://foss.heptapod.net/fluiddyn/fluidsim/-/merge_requests/7Make HDF5 mpi mode work2020-02-12T22:48:32ZBitbucket ImporterMake HDF5 mpi mode work*Created originally on Bitbucket by [avmo (Ashwin Vishnu)](https://bitbucket.org/%7Bbd72905e-cf99-4847-84c2-998104370f6e%7D/)*
*Changesets for this Pull Request have not been imported, because it had been already declined on Bitbucket...*Created originally on Bitbucket by [avmo (Ashwin Vishnu)](https://bitbucket.org/%7Bbd72905e-cf99-4847-84c2-998104370f6e%7D/)*
*Changesets for this Pull Request have not been imported, because it had been already declined on Bitbucket. Marked as closed by the import user.*
* Generalize state\_phys loading by using a new attribute sim.oper.axes
* Empty tuple as axes for operators0d
* Debug phys\_fields MPI write
Work in progress as usual, some commits present from enh/sphereharmo-works bookmark.https://foss.heptapod.net/fluiddyn/fluidsim/-/merge_requests/12Make HDF5 mpi mode work and allow loading state_phys from files making use of...2020-02-12T22:48:41ZBitbucket ImporterMake HDF5 mpi mode work and allow loading state_phys from files making use of sim.oper.axes*Created originally on Bitbucket by [avmo (Ashwin Vishnu)](https://bitbucket.org/%7Bbd72905e-cf99-4847-84c2-998104370f6e%7D/)*
*Was already merged in Bitbucket before import, marked as merged by the import user*
* Generalize state\_p...*Created originally on Bitbucket by [avmo (Ashwin Vishnu)](https://bitbucket.org/%7Bbd72905e-cf99-4847-84c2-998104370f6e%7D/)*
*Was already merged in Bitbucket before import, marked as merged by the import user*
* Generalize state\_phys loading by using a new attribute sim.oper.axes
* Empty tuple as axes for operators0d
* Debug phys\_fields MPI write
* Absolute import to allow running as: mpirun -n 2 python fluidsim/solvers/ns2d/solver.py
* Remove debug messages
Test: `mpirun -n 2 python fluidsim/solvers/ns2d/solver.py`https://foss.heptapod.net/fluiddyn/fluidsim/-/merge_requests/91Mention the papers in the doc2019-03-01T07:20:22ZBitbucket ImporterMention the papers in the doc*Created originally on Bitbucket by [paugier (Pierre Augier)](https://bitbucket.org/%7Beb327c54-cadd-4fce-9edd-f8fe047a9b93%7D/)*
*Was already merged in Bitbucket before import, marked as merged by the import user*
*Created originally on Bitbucket by [paugier (Pierre Augier)](https://bitbucket.org/%7Beb327c54-cadd-4fce-9edd-f8fe047a9b93%7D/)*
*Was already merged in Bitbucket before import, marked as merged by the import user*
https://foss.heptapod.net/fluiddyn/fluidsim/-/merge_requests/9Merged with fluiddyn/fluidsim2018-10-05T12:46:51ZBitbucket ImporterMerged with fluiddyn/fluidsim*Created originally on Bitbucket by [calpe (Miguel Calpe)](https://bitbucket.org/%7B3a110e54-047d-4a20-bfc6-0f16d9ecf7a6%7D/)*
*Was already merged in Bitbucket before import, marked as merged by the import user*
* Find resolution fro...*Created originally on Bitbucket by [calpe (Miguel Calpe)](https://bitbucket.org/%7B3a110e54-047d-4a20-bfc6-0f16d9ecf7a6%7D/)*
*Was already merged in Bitbucket before import, marked as merged by the import user*
* Find resolution from path.e
* Solved bug write into file results.txt.
* Make black.
* Simulation from stationarity state.
* Plot value kfx and kfz in spect\_energy\_budget.
* Fix bug name path\_run.
* Save temporal results for cluster.
* .
* Commit merge \+ scripts submit legi.
* Library argparse for fluidsim/scripts/ns2d.strat
* Add parameter cfl\_coef\_group.
* Add try to skip bugs when use load\_state\_phys\_file.
* Factor 2pi in omega\_af.
* Plot frequency spectra from a individual mode.
* Implement tmax=None in spect\_energy\_budget and spectra.
* Implement coef\_group=None in time\_stepping.
* Scripts to compute and plot buoyancy Reynolds and horizontal Froude.
* Changes scripts/ns2d.strathttps://foss.heptapod.net/fluiddyn/fluidsim/-/merge_requests/353Meson: Pythran option complex_hook2024-01-08T11:09:10ZPierre AugierMeson: Pythran option complex_hookhttps://foss.heptapod.net/fluiddyn/fluidsim/-/merge_requests/58Migrate some oper attributes and methods to sw1l2019-01-19T12:53:38ZBitbucket ImporterMigrate some oper attributes and methods to sw1l*Created originally on Bitbucket by [avmo (Ashwin Vishnu)](https://bitbucket.org/%7Bbd72905e-cf99-4847-84c2-998104370f6e%7D/)*
*Was already merged in Bitbucket before import, marked as merged by the import user*
Fixes #21*Created originally on Bitbucket by [avmo (Ashwin Vishnu)](https://bitbucket.org/%7Bbd72905e-cf99-4847-84c2-998104370f6e%7D/)*
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Fixes #21