Fresh install in Miniconda, fluidsim-test fails

Created originally on Bitbucket by avmo (Ashwin Vishnu)

~/s/l/augier_vishnu_lindborg_sw1l (default) ❯❯❯ TRANSONIC_DEBUG=1 fluidsim-test -m solvers.sw1l.onlywaves                                                                                       (augier_etal_2019)
Fluidsim guesses that it is tested so it loads the Agg Matplotlib backend.
Compilation of jit functions disabled.
/home/mech/avmo/scratch/miniconda3/envs/augier_etal_2019/lib/python3.7/site-packages/fluidsim/util/testing.py:222: UserWarning: Assuming you forgot to add fluidsim in front of module name: solvers.sw1l.onlywaves
  f"Assuming you forgot to add fluidsim in front of module name: {module_name}"
DEBUG    extast.parse
DEBUG    compute ancestors and chains
DEBUG    compute code dependance
DEBUG    {'compute_Frot': '', 'compute_pressure': ''}
DEBUG    extast.parse
DEBUG    compute ancestors and chains
DEBUG    compute code dependance
DEBUG    {'_qapamfft_from_uxuyetafft': 'import numpy as np'}
ERROR

======================================================================
ERROR: setUpClass (test_solver.TestSimulSW1LWaves)
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Traceback (most recent call last):
  File "/home/mech/avmo/scratch/miniconda3/envs/augier_etal_2019/lib/python3.7/site-packages/fluidsim/util/testing.py", line 78, in setUpClass
    cls.init_params()
  File "/home/mech/avmo/scratch/miniconda3/envs/augier_etal_2019/lib/python3.7/site-packages/fluidsim/solvers/sw1l/onlywaves/test_solver.py", line 15, in init_params
    super().init_params()
  File "/home/mech/avmo/scratch/miniconda3/envs/augier_etal_2019/lib/python3.7/site-packages/fluidsim/util/testing.py", line 56, in init_params
    params = cls.params = cls.Simul.create_default_params()
  File "/home/mech/avmo/scratch/miniconda3/envs/augier_etal_2019/lib/python3.7/site-packages/fluidsim/base/solvers/base.py", line 95, in create_default_params
    cls.info_solver.complete_with_classes()
  File "/home/mech/avmo/scratch/miniconda3/envs/augier_etal_2019/lib/python3.7/site-packages/fluidsim/base/solvers/info_base.py", line 119, in complete_with_classes
    dict_classes = self.import_classes()
  File "/home/mech/avmo/scratch/miniconda3/envs/augier_etal_2019/lib/python3.7/site-packages/fluidsim/base/solvers/info_base.py", line 113, in import_classes
    Class = import_class(module_name, class_name)
  File "/home/mech/avmo/scratch/miniconda3/envs/augier_etal_2019/lib/python3.7/site-packages/fluiddyn/util/util.py", line 35, in import_class
    module = import_module(module_name)
  File "/home/mech/avmo/scratch/miniconda3/envs/augier_etal_2019/lib/python3.7/importlib/__init__.py", line 127, in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
  File "<frozen importlib._bootstrap>", line 1006, in _gcd_import
  File "<frozen importlib._bootstrap>", line 983, in _find_and_load
  File "<frozen importlib._bootstrap>", line 967, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 677, in _load_unlocked
  File "<frozen importlib._bootstrap_external>", line 728, in exec_module
  File "<frozen importlib._bootstrap>", line 219, in _call_with_frames_removed
  File "/home/mech/avmo/scratch/miniconda3/envs/augier_etal_2019/lib/python3.7/site-packages/fluidsim/solvers/sw1l/operators.py", line 43, in <module>
    rank: int,
  File "/home/mech/avmo/scratch/miniconda3/envs/augier_etal_2019/lib/python3.7/site-packages/transonic/justintime.py", line 235, in jit
    return decor(func)
  File "/home/mech/avmo/scratch/miniconda3/envs/augier_etal_2019/lib/python3.7/site-packages/transonic/justintime.py", line 320, in __call__
    r"@.*?\sdef\s", "def ", get_source_without_decorator(func)
  File "/home/mech/avmo/scratch/miniconda3/envs/augier_etal_2019/lib/python3.7/site-packages/transonic/util.py", line 195, in get_source_without_decorator
    return strip_typehints(re.sub(r"@.*?\sdef\s", "def ", src))
  File "/home/mech/avmo/scratch/miniconda3/envs/augier_etal_2019/lib/python3.7/site-packages/transonic/util.py", line 233, in strip_typehints
    striped_code = astunparse.unparse(transformed)
  File "/home/mech/avmo/scratch/miniconda3/envs/augier_etal_2019/lib/python3.7/site-packages/astunparse/__init__.py", line 13, in unparse
    Unparser(tree, file=v)
  File "/home/mech/avmo/scratch/miniconda3/envs/augier_etal_2019/lib/python3.7/site-packages/astunparse/unparser.py", line 38, in __init__
    self.dispatch(tree)
  File "/home/mech/avmo/scratch/miniconda3/envs/augier_etal_2019/lib/python3.7/site-packages/astunparse/unparser.py", line 66, in dispatch
    meth(tree)
  File "/home/mech/avmo/scratch/miniconda3/envs/augier_etal_2019/lib/python3.7/site-packages/astunparse/unparser.py", line 78, in _Module
    self.dispatch(stmt)
  File "/home/mech/avmo/scratch/miniconda3/envs/augier_etal_2019/lib/python3.7/site-packages/astunparse/unparser.py", line 66, in dispatch
    meth(tree)
  File "/home/mech/avmo/scratch/miniconda3/envs/augier_etal_2019/lib/python3.7/site-packages/astunparse/unparser.py", line 347, in _FunctionDef
    self._generic_FunctionDef(t)
  File "/home/mech/avmo/scratch/miniconda3/envs/augier_etal_2019/lib/python3.7/site-packages/astunparse/unparser.py", line 343, in _generic_FunctionDef
    self.dispatch(t.body)
  File "/home/mech/avmo/scratch/miniconda3/envs/augier_etal_2019/lib/python3.7/site-packages/astunparse/unparser.py", line 63, in dispatch
    self.dispatch(t)
  File "/home/mech/avmo/scratch/miniconda3/envs/augier_etal_2019/lib/python3.7/site-packages/astunparse/unparser.py", line 66, in dispatch
    meth(tree)
  File "/home/mech/avmo/scratch/miniconda3/envs/augier_etal_2019/lib/python3.7/site-packages/astunparse/unparser.py", line 376, in _If
    self.dispatch(t.body)
  File "/home/mech/avmo/scratch/miniconda3/envs/augier_etal_2019/lib/python3.7/site-packages/astunparse/unparser.py", line 63, in dispatch
    self.dispatch(t)
  File "/home/mech/avmo/scratch/miniconda3/envs/augier_etal_2019/lib/python3.7/site-packages/astunparse/unparser.py", line 66, in dispatch
    meth(tree)
  File "/home/mech/avmo/scratch/miniconda3/envs/augier_etal_2019/lib/python3.7/site-packages/astunparse/unparser.py", line 367, in _For
    self._generic_For(t)
  File "/home/mech/avmo/scratch/miniconda3/envs/augier_etal_2019/lib/python3.7/site-packages/astunparse/unparser.py", line 358, in _generic_For
    self.dispatch(t.body)
  File "/home/mech/avmo/scratch/miniconda3/envs/augier_etal_2019/lib/python3.7/site-packages/astunparse/unparser.py", line 63, in dispatch
    self.dispatch(t)
  File "/home/mech/avmo/scratch/miniconda3/envs/augier_etal_2019/lib/python3.7/site-packages/astunparse/unparser.py", line 66, in dispatch
    meth(tree)
  File "/home/mech/avmo/scratch/miniconda3/envs/augier_etal_2019/lib/python3.7/site-packages/astunparse/unparser.py", line 367, in _For
    self._generic_For(t)
  File "/home/mech/avmo/scratch/miniconda3/envs/augier_etal_2019/lib/python3.7/site-packages/astunparse/unparser.py", line 358, in _generic_For
    self.dispatch(t.body)
  File "/home/mech/avmo/scratch/miniconda3/envs/augier_etal_2019/lib/python3.7/site-packages/astunparse/unparser.py", line 63, in dispatch
    self.dispatch(t)
  File "/home/mech/avmo/scratch/miniconda3/envs/augier_etal_2019/lib/python3.7/site-packages/astunparse/unparser.py", line 66, in dispatch
    meth(tree)
  File "/home/mech/avmo/scratch/miniconda3/envs/augier_etal_2019/lib/python3.7/site-packages/astunparse/unparser.py", line 374, in _If
    self.dispatch(t.test)
  File "/home/mech/avmo/scratch/miniconda3/envs/augier_etal_2019/lib/python3.7/site-packages/astunparse/unparser.py", line 66, in dispatch
    meth(tree)
  File "/home/mech/avmo/scratch/miniconda3/envs/augier_etal_2019/lib/python3.7/site-packages/astunparse/unparser.py", line 683, in _BoolOp
    s = " %s " % self.boolops[t.op.__class__]
KeyError: <class 'gast.gast.And'>

----------------------------------------------------------------------
Ran 0 tests in 1.316s

FAILED (errors=1)
~/s/l/augier_vishnu_lindborg_sw1l (default) ❯❯❯ TRANSONIC_DEBUG=1 TRANSONIC_NO_REPLACE=1 fluidsim-test -m solvers.sw1l.onlywaves                                                                (augier_etal_2019)
Fluidsim guesses that it is tested so it loads the Agg Matplotlib backend.
Compilation of jit functions disabled.
/home/mech/avmo/scratch/miniconda3/envs/augier_etal_2019/lib/python3.7/site-packages/fluidsim/util/testing.py:222: UserWarning: Assuming you forgot to add fluidsim in front of module name: solvers.sw1l.onlywaves
  f"Assuming you forgot to add fluidsim in front of module name: {module_name}"
test_energy_conservation (test_solver.TestSimulSW1LWaves)
Verify that the energy growth rate due to nonlinear tendencies ... ok
test_init_methods (test_solver.TestSimulSW1LWaves) ... ok
test_state_compute (test_solver.TestSimulSW1LWaves) ... ok
test_state_methods (test_solver.TestSimulSW1LWaves) ... ok

----------------------------------------------------------------------
Ran 4 tests in 3.416s

OK

It seems to be a transonic issue. I am also attaching the output of conda env export so that it may be reproduced.