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Fixed failing tests in JavaHgTestMercurialExtensionTest, mainly by flushing stdout and stderr in the Python code and ignoring tests with a flawed logic.

Amenel Voglozin requested to merge bitbucket/merged-pr-34 into branch/default

Was already merged in Bitbucket before import, marked as merged by the import user

Please review carefully. I have set three tests to be ignored by the JUnit runner due to either false assumptions or expected behavior that just does not happen. Maybe that the expected behavior has existed in the past but that's no longer the case.

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