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This instance will be upgraded to Heptapod 17.9.0 final on 2025-04-04 between 14:00 and 15:00 UTC+2
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fluiddyn
fluiddyn_papers
Commits
296c4252
Commit
296c4252
authored
6 years ago
by
Pierre Augier
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More small corrections fluiddyn and fig_simul_obj.dio.
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fluiddyn/fluiddyn_paper.tex
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37 additions, 38 deletions
fluiddyn/fluiddyn_paper.tex
fluidsim/Pyfig/fig_simul_obj.dio
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fluidsim/Pyfig/fig_simul_obj.dio
fluidsim/Pyfig/fig_simul_obj.pdf
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fluidsim/Pyfig/fig_simul_obj.pdf
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fluiddyn/fluiddyn_paper.tex
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296c4252
...
...
@@ -851,7 +851,8 @@
interesting.
}
.
%
It seems that a very important aspect in the future will be interoperability
between coexisting tools.
between coexisting tools
\footnote
{
See for example the cross-language development
platform
\href
{
https://arrow.apache.org/
}{
Apache Arrow
}
.
}
.
So what about Python? As already mentioned, it is today the language with the
strongest dynamics in science, data analysis and much more. Several students
...
...
@@ -1164,8 +1165,8 @@
The scientific Python ecosystem is now very mature, robust, well documented and
fully integrated. Many of this components are supported by professional
developers paid by companies or research institutes, for example
\pack
{
Numba
}
(Anaconda, Nvidia),
\pack
{
TensorFlow
}
(Google),
\pack
{
PyTorch
}
(Facebook,
Twitter
), Scikit-learn (INRIA), Mercurial (Facebook).
(Anaconda, Nvidia),
\pack
{
TensorFlow
}
(Google),
\pack
{
PyTorch
}
(Facebook,
Twitter,
Nvidia
), Scikit-learn (INRIA), Mercurial (Facebook).
%
The support by the Python community is both very reactive and of very good
level (for example in Stack Overflow, and issues page on major repositories)
...
...
@@ -1309,7 +1310,7 @@
when they work on these programs, they work (often, for free) for the company that
sells the proprietary tool?
Some
real
open-source codes have emerged, for example
Some
proper
open-source codes have emerged, for example
\href
{
https://nek5000.mcs.anl.gov/
}{
NEK5000
}
(Fortran),
\href
{
https://www.openfoam.com/
}{
OpenFOAM
}
(C++),
\href
{
http://basilisk.fr
}{
Basilisk
}
(C) and
...
...
@@ -1322,7 +1323,7 @@
2006
\footnote
{
\url
{
https://www.nas.nasa.gov/assets/pdf/ams/
%
2014/AMS
_
20141202
_
Othmer.pdf
}}
.
%
EDF, the main French electric utility company has also a
very
interesting
EDF, the main French electric utility company has also a interesting
\href
{
http://linuxfr.org/news/strat
\%
C3
\%
A9gie-open-source-
\%
C3
\%
A0-edf-rd
}{
%
open-source strategy
}
. It has produced many programs and in particular the CFD
solver
\href
{
https://www.code-saturne.org
}{
Code
\_
Saturn
}
.
...
...
@@ -1397,9 +1398,8 @@
Now, FluidDyn project hosts a number of specialized packages, namely:
\begin{itemize}
\item
\fluidpack
{
dyn
}
: The base package which contains pure-python code that
can be reused in scripts or in specialized FluidDyn packages. It also contains
codes for miscellaneous command-line utilities useful for a typical fluid
dynamics user.
\item
\fluidpack
{
dyn
}
: The base package which contains pure-python code that can
be reused in scripts or in specialized FluidDyn packages. It also contains codes
for miscellaneous command-line utilities useful for a typical fluid dynamics user.
The code of this package is presented in further detail in its documentation
...
...
@@ -1404,5 +1404,5 @@
The code of this package is presented in further detail in its documentation
(
\url
{
https://fluiddyn.readthedocs.io
}
) and some prominent features are
presented
in the following subsection.
(
\url
{
https://fluiddyn.readthedocs.io
}
) and some prominent features are
presented
in the following subsection.
...
...
@@ -1408,8 +1408,8 @@
\item
\fluidpack
{
fft
}
~
\cite
[see the companion paper][]
{
fluidfft
}
: a package
which
provides C++ and Python classes unifying various libaries to perform Fast
Fourier
Transform (FFT) in sequential and in parallel.
\item
\fluidpack
{
fft
}
~
\cite
[see the companion paper][]
{
fluidfft
}
: a package
which
provides C++ and Python classes unifying various libaries to perform Fast
Fourier
Transform (FFT) in sequential and in parallel.
\item
\fluidpack
{
sim
}
~
\cite
[see the companion paper][]
{
fluidsim
}
: Numerically
oriented framework to run sequential and parallel Computational Fluid Dynamics
(CFD) simulations and on-the-fly post-processing for a variety of problems
...
...
@@ -1412,8 +1412,8 @@
\item
\fluidpack
{
sim
}
~
\cite
[see the companion paper][]
{
fluidsim
}
: Numerically
oriented framework to run sequential and parallel Computational Fluid Dynamics
(CFD) simulations and on-the-fly post-processing for a variety of problems
(Navier-Stokes, Shallow Water, F
\"
oppl von K
\'
arm
\'
an equations, to name a
few).
A study using
\fluidpack
{
sim
}
has just been published in Physics of
Fluids
\cite
[]
{
LindborgMohanan2017
}
.
(Navier-Stokes, Shallow Water, F
\"
oppl von K
\'
arm
\'
an equations, to name a
few).
A study using
\fluidpack
{
sim
}
has just been published in Physics of
Fluids
\cite
[]
{
LindborgMohanan2017
}
.
...
...
@@ -1419,7 +1419,7 @@
\item
\fluidpack
{
lab
}
: Package to handle laboratory experiments. Primarily used
to
communicate with various hardware devices such as motors and pumps, to
handle I/O
between sensors, and to store data.
\item
\fluidpack
{
lab
}
: Package to handle laboratory experiments. Primarily used
to
communicate with various hardware devices such as motors and pumps, to
handle I/O
between sensors, and to store data.
%
Experiments using
\fluidpack
{
lab
}
have been carried out in the DAMTP fluid
laboratory
\cite
[Cambridge,
...
...
@@ -1437,11 +1437,11 @@
\item
\fluidpack
{
foam
}
: Small package to load OpenFoam data and plot them.
\item
\fluidpack
{
coriolis
}
: Small package used to carry out experiments in the
\href
{
http://www.legi.grenoble-inp.fr/web/spip.php?article757
}{
Coriolis
platform
}
(a large rotating platform participating in the European consortiums
Euhit and
Hydralab) and open the data obtained
\cite
[see, for
example,][]
{
ISSF2016
}
. One of
the motivations behind creating this package is
to study how to use open-source to creat
e open-data.
\href
{
http://www.legi.grenoble-inp.fr/web/spip.php?article757
}{
Coriolis
platform
}
(a large rotating platform participating in the European consortiums
Euhit and
Hydralab) and open the data obtained
\cite
[see, for
example,][]
{
ISSF2016
}
. One of
the motivations behind creating this package is
to study how to use open-source to
create and shar
e open-data.
\end{itemize}
...
...
@@ -1503,17 +1503,16 @@
\subsubsection*
{
Module
\codeinline
{
fluiddyn.util.serieofarrays
}}
This modules provides classes to iterate over files. It is a common task in
data processing to understand how to organized a
\textit
{
serie
}
of files its
from filenames and formats. Then one has to form smaller set of arrays
contained in the files. For example, we can have such
\textit
{
serie
}
:
\codeinline
{
im1
\_
1.png, im1
\_
2.png, im1
\_
3.png, im2
\_
1.png, im2
\_
2.png,
im2
\_
3.png
}
and we could create subsets like
\codeinline
{
((im1
\_
1.png,
im1
\_
2.png, im1
\_
2.png), (im2
\_
1.png, im2
\_
2.png, im2
\_
3.png))
}
. From the same
\textit
{
serie
}
of images, we can also create other subsets
\codeinline
{
((im1
\_
1.png, im2
\_
1.png), (im1
\_
2.png, im2
\_
2.png), (im1
\_
3.png,
im2
\_
3.png))
}
.
This modules provides classes to iterate over files. It is a common task in data
processing to understand how to organized a
\textit
{
serie
}
of files from filenames
and formats. Then one has to form smaller sets of arrays contained in the
files. For example, we can have such
\textit
{
serie
}
:
\codeinline
{
im1
\_
1.png,
im1
\_
2.png, im1
\_
3.png, im2
\_
1.png, im2
\_
2.png, im2
\_
3.png
}
and we could create
subsets like
\codeinline
{
((im1
\_
1.png, im1
\_
2.png, im1
\_
2.png), (im2
\_
1.png,
im2
\_
2.png, im2
\_
3.png))
}
. From the same
\textit
{
serie
}
of images, we can also
create other subsets
\codeinline
{
((im1
\_
1.png, im2
\_
1.png), (im1
\_
2.png,
im2
\_
2.png), (im1
\_
3.png, im2
\_
3.png))
}
.
The classes of this module allows one to do it with a quite simple and general
API as shown in
\href
{
http://fluiddyn.readthedocs.io/en/latest/ipynb/tuto
_
serieofarrays.html
}{
%
...
...
@@ -1516,8 +1515,8 @@
The classes of this module allows one to do it with a quite simple and general
API as shown in
\href
{
http://fluiddyn.readthedocs.io/en/latest/ipynb/tuto
_
serieofarrays.html
}{
%
the tutorial on th
is
module
}
.
the tutorial on th
e
module
}
.
\subsubsection*
{
Module
\codeinline
{
fluiddyn.util.mpi
}}
...
...
@@ -1545,7 +1544,7 @@
\item
\codeinline
{
fluidinfo
}
Displays
all
important information related to software and hardware. It
Displays important information related to software and hardware. It
includes detailed information such as currently installed FluidDyn packages,
other third-party packages, C compiler, MPI and
\Numpy
configuration.
...
...
@@ -1600,7 +1599,7 @@
landing page of the Bitbucket repository.
We also try to follow a consistent code style as recomended by PEP (Python
enhancement proposals)
---
8 and 257. This is also inspected using lint checkers
enhancement proposals) 8 and 257. This is also inspected using lint checkers
such as
\codeinline
{
flake8
}
and
\codeinline
{
pylint
}
among the developers. The
code is regularly cleaned up using the Python code formatter
\codeinline
{
black
}
.
...
...
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