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tests: run most tests with dirstate v2

Arseniy Alekseyev requested to merge topic/stable/test-dirstate-v2 into branch/stable

The commit "dirstate-v2: do not put the dirstate data file in a transaction" is duplicated with MR#309.

If the new CI variant is not desired, I'm happy to remove it, but I still want to keep the test tweaks.

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