scripts: rename update-benchrepo to upgrade-reference
Having both `update-reference-config` and `update-benchrepo` is confusing. So we rename `update-benchrepo`. `update` is changed to `upgrade` to clarify that this is meant to move from an older version to a newer one. And `benchrepo` is changed to `reference`, the fact it touches `benchrepo` is mostly an implementation details, the main argument is a `*-reference.tar` file.
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